Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 641339
Gene Symbol: ZNF674
ZNF674
0.020 Biomarker disease BEFREE ZNF630 is a member of the primate-specific Xp11 zinc finger gene cluster that consists of six closely related genes, of which ZNF41, ZNF81, and ZNF674 have been shown to be involved in mental retardation. 20186789 2010
Entrez Id: 347344
Gene Symbol: ZNF81
ZNF81
0.020 Biomarker disease BEFREE ZNF630 is a member of the primate-specific Xp11 zinc finger gene cluster that consists of six closely related genes, of which ZNF41, ZNF81, and ZNF674 have been shown to be involved in mental retardation. 20186789 2010
Entrez Id: 22871
Gene Symbol: NLGN1
NLGN1
0.010 Biomarker disease BEFREE Yet since NLGN1 is involved in synaptogenesis in the central nervous system, altered gene dosage is a good candidate for mental retardation as a recurrent feature of dup(3q) syndrome. 15551338 2005
Entrez Id: 412
Gene Symbol: STS
STS
0.090 GeneticVariation disease BEFREE Xp22.3 interstitial deletion: a recognizable chromosomal abnormality encompassing VCX3A and STS genes in a patient with X-linked ichthyosis and mental retardation. 23791652 2013
Entrez Id: 51481
Gene Symbol: VCX3A
VCX3A
0.070 GeneticVariation disease BEFREE Xp22.3 interstitial deletion: a recognizable chromosomal abnormality encompassing VCX3A and STS genes in a patient with X-linked ichthyosis and mental retardation. 23791652 2013
Entrez Id: 4412
Gene Symbol: MRX49
MRX49
0.030 GeneticVariation disease BEFREE Xp22.3 deletion in males can be associated with short stature (SHOX), chondrodysplasia punctata (ARSE), mental retardation (MRX49 locus), ichthyosis (STS), Kallmann syndrome (KAL1) and ocular albinism (OA1), according to the size of the deletion. 18194880 2008
Entrez Id: 6594
Gene Symbol: SMARCA1
SMARCA1
0.010 Biomarker disease BEFREE X-linked α-thalassemia with mental retardation (ATRX) is a chromatin remodeling protein that belongs to the SWItch/sucrose non-fermentable (SWI2/SNF2) family of helicase/ATPases. 30649195 2019
Entrez Id: 6597
Gene Symbol: SMARCA4
SMARCA4
0.010 Biomarker disease BEFREE X-linked α-thalassemia with mental retardation (ATRX) is a chromatin remodeling protein that belongs to the SWItch/sucrose non-fermentable (SWI2/SNF2) family of helicase/ATPases. 30649195 2019
Entrez Id: 6595
Gene Symbol: SMARCA2
SMARCA2
0.010 Biomarker disease BEFREE X-linked α-thalassemia with mental retardation (ATRX) is a chromatin remodeling protein that belongs to the SWItch/sucrose non-fermentable (SWI2/SNF2) family of helicase/ATPases. 30649195 2019
Entrez Id: 5063
Gene Symbol: PAK3
PAK3
0.060 GeneticVariation disease BEFREE X-linked mild non-syndromic mental retardation with neuropsychiatric problems and the missense mutation A365E in PAK3. 12884430 2003
Entrez Id: 3897
Gene Symbol: L1CAM
L1CAM
0.100 Biomarker disease BEFREE X-linked hydrocephalus (XLH), characterized by mental retardation and bilateral adducted thumbs, often come out to be a genetic disorder of L1CAM. 31756056 2020
Entrez Id: 6792
Gene Symbol: CDKL5
CDKL5
0.070 GeneticVariation disease BEFREE X-linked cyclin-dependent kinase-like 5 (CDKL5 or STK9) has recently been implicated in atypical Rett and X-linked West syndromes, severe neurological disorders associated with mental retardation, loss of communication and motor skills and infantile spasms and seizures in predominantly females. 16330482 2005
Entrez Id: 1641
Gene Symbol: DCX
DCX
0.040 GeneticVariation disease BEFREE X linked lissencephaly and subcortical band heterotopia (XLIS/SBH) is a disorder of cortical development, which causes classical lissencephaly with severe mental retardation and epilepsy in hemizygous males and SBH associated with milder mental retardation and epilepsy in heterozygous females. 9783706 1998
Entrez Id: 29954
Gene Symbol: POMT2
POMT2
0.040 GeneticVariation disease BEFREE Within this group mutations in the protein O-mannosyltransferase genes (POMT1 and POMT2) are known to cause a spectrum of CMD disorders including the Walker-Warburg Syndrome with severe brain and ocular malformations, and the limb girdle muscular dystrophy with and without mental retardation. 24556424 2014
Entrez Id: 10585
Gene Symbol: POMT1
POMT1
0.060 GeneticVariation disease BEFREE Within this group mutations in the protein O-mannosyltransferase genes (POMT1 and POMT2) are known to cause a spectrum of CMD disorders including the Walker-Warburg Syndrome with severe brain and ocular malformations, and the limb girdle muscular dystrophy with and without mental retardation. 24556424 2014
Entrez Id: 2334
Gene Symbol: AFF2
AFF2
0.100 Biomarker disease BEFREE With the forthcoming identification of the gene targets that trigger Purkinje cell death in the robotic cerebellum, and the functional conservation among the ALF proteins, the robotic mouse promises to deliver important insights into the pathogenesis of human ataxia, but also of mental retardation to which FMR2 and LAF4 have been linked. 19340490 2009
Entrez Id: 2481
Gene Symbol: FRAXE
FRAXE
0.100 Biomarker disease BEFREE With the forthcoming identification of the gene targets that trigger Purkinje cell death in the robotic cerebellum, and the functional conservation among the ALF proteins, the robotic mouse promises to deliver important insights into the pathogenesis of human ataxia, but also of mental retardation to which FMR2 and LAF4 have been linked. 19340490 2009
Entrez Id: 3899
Gene Symbol: AFF3
AFF3
0.020 Biomarker disease BEFREE With the forthcoming identification of the gene targets that trigger Purkinje cell death in the robotic cerebellum, and the functional conservation among the ALF proteins, the robotic mouse promises to deliver important insights into the pathogenesis of human ataxia, but also of mental retardation to which FMR2 and LAF4 have been linked. 19340490 2009
Entrez Id: 5080
Gene Symbol: PAX6
PAX6
0.100 GeneticVariation disease BEFREE Wilms tumor, aniridia, genitourinary anomalies, and mental retardation (WAGR) syndrome is a contiguous gene deletion syndrome involving the Wilms tumor 1 gene (WT1), the paired box gene 6 (PAX6), and possibly other genes on chromosome 11p13. 15779010 2005
Entrez Id: 7490
Gene Symbol: WT1
WT1
0.100 GeneticVariation disease BEFREE Wilms tumor, aniridia, genitourinary anomalies, and mental retardation (WAGR) syndrome is a contiguous gene deletion syndrome involving the Wilms tumor 1 gene (WT1), the paired box gene 6 (PAX6), and possibly other genes on chromosome 11p13. 15779010 2005
Entrez Id: 5080
Gene Symbol: PAX6
PAX6
0.100 GeneticVariation disease BEFREE Wilms tumor, aniridia, genitourinary anomalies and mental retardation (WAGR) syndrome is a rare genetic disorder caused by heterozygous deletions of WT1 and PAX6 at chromosome 11p13. 29061165 2017
Entrez Id: 7592
Gene Symbol: ZNF41
ZNF41
0.010 Biomarker disease BEFREE Wild-type ZNF41 contains a highly conserved transcriptional repressor domain that is linked to mechanisms of chromatin remodeling, a process that is defective in various other forms of MR. Our results suggest that ZNF41 is critical for cognitive development; further studies aim to elucidate the specific mechanisms by which ZNF41 alterations lead to MR. 14628291 2003
Entrez Id: 80210
Gene Symbol: ARMC9
ARMC9
0.010 GeneticVariation disease BEFREE Whole exome sequencing reveals a mutation in ARMC9 as a cause of mental retardation, ptosis, and polydactyly. 29159890 2018
Entrez Id: 5080
Gene Symbol: PAX6
PAX6
0.100 GeneticVariation disease BEFREE While the Wilms tumor/genitourinary anomalies and aniridia are caused by deletion of WT1 and PAX6 respectively, the genomic cause of mental retardation and autism in WAGR syndrome remains unknown. 19096215 2008
Entrez Id: 1859
Gene Symbol: DYRK1A
DYRK1A
0.200 Biomarker disease BEFREE While not genome-wide significant, the gene with the strongest association (p-value = 8.7×10(-5)) was DYRK1A, a gene previously related to abnormal brain development and mental retardation. 23077488 2012